A0A087ZRM8 protein (Apis mellifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A087ZRM8

PNPLA domain-containing protein. (524 aa)

Predicted Functional Partners:

LOC413702

0.748

LOC552611

0.698

A0A088A4U9

0.591

LOC411036

0.585

MED14

0.559

A0A088AH30

0.557

A0A087ZNV6

0.514

A0A088AK79

0.514

LOC409905

0.513

LOC413020

0.487

Your Current Organism:

Apis mellifera

NCBI taxonomy Id: 7460
Other names: A. mellifera, Apis mellifica, European honey bee, Western honey bee, bee, honey bee, honeybee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A087ZNV6	A0A087ZRM8	A0A087ZNV6	A0A087ZRM8	Uncharacterized protein.	PNPLA domain-containing protein.	0.514
A0A087ZNV6	LOC413702	A0A087ZNV6	A0A088AAN0	Uncharacterized protein.	Uncharacterized protein.	0.466
A0A087ZRM8	A0A087ZNV6	A0A087ZRM8	A0A087ZNV6	PNPLA domain-containing protein.	Uncharacterized protein.	0.514
A0A087ZRM8	A0A088A4U9	A0A087ZRM8	A0A088A4U9	PNPLA domain-containing protein.	Uncharacterized protein.	0.591
A0A087ZRM8	A0A088AH30	A0A087ZRM8	A0A088AH30	PNPLA domain-containing protein.	TF_AP-2 domain-containing protein.	0.557
A0A087ZRM8	A0A088AK79	A0A087ZRM8	A0A088AK79	PNPLA domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.514
A0A087ZRM8	LOC409905	A0A087ZRM8	A0A088AT65	PNPLA domain-containing protein.	Uncharacterized protein.	0.513
A0A087ZRM8	LOC411036	A0A087ZRM8	A0A088AFX5	PNPLA domain-containing protein.	Uncharacterized protein.	0.585
A0A087ZRM8	LOC413020	A0A087ZRM8	A0A088A5T7	PNPLA domain-containing protein.	Uncharacterized protein.	0.487
A0A087ZRM8	LOC413702	A0A087ZRM8	A0A088AAN0	PNPLA domain-containing protein.	Uncharacterized protein.	0.748
A0A087ZRM8	LOC552611	A0A087ZRM8	A0A088A337	PNPLA domain-containing protein.	AB hydrolase-1 domain-containing protein.	0.698
A0A087ZRM8	MED14	A0A087ZRM8	A0A088AJH9	PNPLA domain-containing protein.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.559
A0A088A4U9	A0A087ZRM8	A0A088A4U9	A0A087ZRM8	Uncharacterized protein.	PNPLA domain-containing protein.	0.591
A0A088AH30	A0A087ZRM8	A0A088AH30	A0A087ZRM8	TF_AP-2 domain-containing protein.	PNPLA domain-containing protein.	0.557
A0A088AK79	A0A087ZRM8	A0A088AK79	A0A087ZRM8	AB hydrolase-1 domain-containing protein.	PNPLA domain-containing protein.	0.514
A0A088AK79	LOC413702	A0A088AK79	A0A088AAN0	AB hydrolase-1 domain-containing protein.	Uncharacterized protein.	0.466
LOC409905	A0A087ZRM8	A0A088AT65	A0A087ZRM8	Uncharacterized protein.	PNPLA domain-containing protein.	0.513
LOC409905	LOC552611	A0A088AT65	A0A088A337	Uncharacterized protein.	AB hydrolase-1 domain-containing protein.	0.611
LOC411036	A0A087ZRM8	A0A088AFX5	A0A087ZRM8	Uncharacterized protein.	PNPLA domain-containing protein.	0.585
LOC413020	A0A087ZRM8	A0A088A5T7	A0A087ZRM8	Uncharacterized protein.	PNPLA domain-containing protein.	0.487