LOC413934 protein (Apis mellifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC413934

STAS domain-containing protein. (669 aa)

Predicted Functional Partners:

A0A087ZYS9

0.505

A0A088ADQ5

0.461

A0A087ZT74

0.423

Rab-RP3

0.423

LOC552625

0.423

GlnS

0.404

A0A088AIM3

0.404

Your Current Organism:

Apis mellifera

NCBI taxonomy Id: 7460
Other names: A. mellifera, Apis mellifica, European honey bee, Western honey bee, bee, honey bee, honeybee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A087ZT74	A0A087ZYS9	A0A087ZT74	A0A087ZYS9	Uncharacterized protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.846
A0A087ZT74	A0A088ADQ5	A0A087ZT74	A0A088ADQ5	Uncharacterized protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.709
A0A087ZT74	LOC413934	A0A087ZT74	A0A088A5L7	Uncharacterized protein.	STAS domain-containing protein.	0.423
A0A087ZYS9	A0A087ZT74	A0A087ZYS9	A0A087ZT74	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.846
A0A087ZYS9	A0A088ADQ5	A0A087ZYS9	A0A088ADQ5	Uncharacterized protein; Belongs to the complex I LYR family.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.955
A0A087ZYS9	LOC413934	A0A087ZYS9	A0A088A5L7	Uncharacterized protein; Belongs to the complex I LYR family.	STAS domain-containing protein.	0.505
A0A087ZYS9	LOC552625	A0A087ZYS9	A0A088A5F6	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.846
A0A087ZYS9	Rab-RP3	A0A087ZYS9	A0A088A0H0	Uncharacterized protein; Belongs to the complex I LYR family.	Uncharacterized protein.	0.846
A0A088ADQ5	A0A087ZT74	A0A088ADQ5	A0A087ZT74	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.709
A0A088ADQ5	A0A087ZYS9	A0A088ADQ5	A0A087ZYS9	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein; Belongs to the complex I LYR family.	0.955
A0A088ADQ5	LOC413934	A0A088ADQ5	A0A088A5L7	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	STAS domain-containing protein.	0.461
A0A088ADQ5	LOC552625	A0A088ADQ5	A0A088A5F6	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.709
A0A088ADQ5	Rab-RP3	A0A088ADQ5	A0A088A0H0	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	Uncharacterized protein.	0.709
A0A088AIM3	LOC413934	A0A088AIM3	A0A088A5L7	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	STAS domain-containing protein.	0.404
GlnS	LOC413934	A0A088A2A8	A0A088A5L7	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	STAS domain-containing protein.	0.404
LOC413934	A0A087ZT74	A0A088A5L7	A0A087ZT74	STAS domain-containing protein.	Uncharacterized protein.	0.423
LOC413934	A0A087ZYS9	A0A088A5L7	A0A087ZYS9	STAS domain-containing protein.	Uncharacterized protein; Belongs to the complex I LYR family.	0.505
LOC413934	A0A088ADQ5	A0A088A5L7	A0A088ADQ5	STAS domain-containing protein.	Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.	0.461
LOC413934	A0A088AIM3	A0A088A5L7	A0A088AIM3	STAS domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.404
LOC413934	GlnS	A0A088A5L7	A0A088A2A8	STAS domain-containing protein.	Gln-synt_C domain-containing protein; Belongs to the glutamine synthetase family.	0.404