A0A088ALK5 protein (Apis mellifera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A088ALK5

UDENN domain-containing protein. (531 aa)

Predicted Functional Partners:

Rab14

0.625

LOC724330

0.605

LOC551701

0.589

LOC552272

0.491

Rnp4F

0.451

LOC410620

0.417

LOC552476

0.403

Your Current Organism:

Apis mellifera

NCBI taxonomy Id: 7460
Other names: A. mellifera, Apis mellifica, European honey bee, Western honey bee, bee, honey bee, honeybee

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A088ALK5	LOC410620	A0A088ALK5	A0A088AGJ8	UDENN domain-containing protein.	Uncharacterized protein; Belongs to the heat shock protein 70 family.	0.417
A0A088ALK5	LOC551701	A0A088ALK5	A0A088AGM7	UDENN domain-containing protein.	UDENN domain-containing protein.	0.589
A0A088ALK5	LOC552272	A0A088ALK5	A0A088A2A5	UDENN domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	0.491
A0A088ALK5	LOC552476	A0A088ALK5	A0A087ZV69	UDENN domain-containing protein.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.403
A0A088ALK5	LOC724330	A0A088ALK5	A0A088A559	UDENN domain-containing protein.	UDENN domain-containing protein.	0.605
A0A088ALK5	Rab14	A0A088ALK5	A0A088A3U8	UDENN domain-containing protein.	Uncharacterized protein.	0.625
A0A088ALK5	Rnp4F	A0A088ALK5	A0A087ZPR6	UDENN domain-containing protein.	Uncharacterized protein.	0.451
LOC410620	A0A088ALK5	A0A088AGJ8	A0A088ALK5	Uncharacterized protein; Belongs to the heat shock protein 70 family.	UDENN domain-containing protein.	0.417
LOC551701	A0A088ALK5	A0A088AGM7	A0A088ALK5	UDENN domain-containing protein.	UDENN domain-containing protein.	0.589
LOC551701	LOC724330	A0A088AGM7	A0A088A559	UDENN domain-containing protein.	UDENN domain-containing protein.	0.612
LOC552272	A0A088ALK5	A0A088A2A5	A0A088ALK5	Uncharacterized protein; Belongs to the universal ribosomal protein uS12 family.	UDENN domain-containing protein.	0.491
LOC552476	A0A088ALK5	A0A087ZV69	A0A088ALK5	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	UDENN domain-containing protein.	0.403
LOC724330	A0A088ALK5	A0A088A559	A0A088ALK5	UDENN domain-containing protein.	UDENN domain-containing protein.	0.605
LOC724330	LOC551701	A0A088A559	A0A088AGM7	UDENN domain-containing protein.	UDENN domain-containing protein.	0.612
Rab14	A0A088ALK5	A0A088A3U8	A0A088ALK5	Uncharacterized protein.	UDENN domain-containing protein.	0.625
Rnp4F	A0A088ALK5	A0A087ZPR6	A0A088ALK5	Uncharacterized protein.	UDENN domain-containing protein.	0.451