A0A2P6P6D7 protein (Rosa chinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2P6P6D7

Tr-type G domain-containing protein. (717 aa)

Predicted Functional Partners:

A0A2P6RIG6

0.954

A0A2P6P7Y3

0.947

A0A2P6RKB2

0.945

A0A2P6QQ80

0.925

A0A2P6R5U1

0.925

A0A2P6PC17

0.918

A0A2P6RXK1

0.918

A0A2P6PGM0

0.912

A0A2P6RX15

0.912

A0A2P6P4D2

0.907

Your Current Organism:

Rosa chinensis

NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2P6P4D2	A0A2P6P6D7	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Tr-type G domain-containing protein.	0.907
A0A2P6P4D2	A0A2P6P7Y3	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative aminoacyl-tRNA hydrolase.	0.930
A0A2P6P4D2	A0A2P6PC17	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.973
A0A2P6P4D2	A0A2P6PGM0	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S17/S11.	0.967
A0A2P6P4D2	A0A2P6QQ80	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.	0.952
A0A2P6P4D2	A0A2P6R5U1	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.	0.952
A0A2P6P4D2	A0A2P6RIG6	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S6.	0.986
A0A2P6P4D2	A0A2P6RKB2	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S16.	0.983
A0A2P6P4D2	A0A2P6RX15	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S17/S11; Belongs to the universal ribosomal protein uS17 family.	0.964
A0A2P6P4D2	A0A2P6RXK1	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	Putative ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.973
A0A2P6P6D7	A0A2P6P4D2	Tr-type G domain-containing protein.	Putative ribosomal protein L11/L12; Belongs to the universal ribosomal protein uL11 family.	0.907
A0A2P6P6D7	A0A2P6P7Y3	Tr-type G domain-containing protein.	Putative aminoacyl-tRNA hydrolase.	0.947
A0A2P6P6D7	A0A2P6PC17	Tr-type G domain-containing protein.	Putative ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.918
A0A2P6P6D7	A0A2P6PGM0	Tr-type G domain-containing protein.	Putative ribosomal protein S17/S11.	0.912
A0A2P6P6D7	A0A2P6QQ80	Tr-type G domain-containing protein.	Putative ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.	0.925
A0A2P6P6D7	A0A2P6R5U1	Tr-type G domain-containing protein.	Putative ribosomal protein S19/S15; Belongs to the universal ribosomal protein uS19 family.	0.925
A0A2P6P6D7	A0A2P6RIG6	Tr-type G domain-containing protein.	Putative ribosomal protein S6.	0.954
A0A2P6P6D7	A0A2P6RKB2	Tr-type G domain-containing protein.	Putative ribosomal protein S16.	0.945
A0A2P6P6D7	A0A2P6RX15	Tr-type G domain-containing protein.	Putative ribosomal protein S17/S11; Belongs to the universal ribosomal protein uS17 family.	0.912
A0A2P6P6D7	A0A2P6RXK1	Tr-type G domain-containing protein.	Putative ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.918