STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P6P6D8Putative transcription factor WD40-like family; Belongs to the WD repeat SEC13 family. (326 aa)    
Predicted Functional Partners:
A0A2P6RYV9
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.998
A0A2P6SCT8
Putative nuclear protein.
   
 0.998
A0A2P6P4C8
Putative peptidase S59, nucleoporin.
   
 0.997
A0A2P6QBP2
Putative transcription factor C2H2 family.
    
 0.994
A0A2P6QVT3
UBA domain-containing protein.
    
 0.994
A0A2P6R0G7
Putative nucleoporin Nup54/Nup57/Nup44, nucleoporin Nup54, alpha-helical domain-containing protein.
   
 0.993
A0A2P6SL56
Putative WD40-repeat-containing domain, nucleoporin Nup88.
   
 0.992
A0A2P6RXC5
Nuclear pore complex protein NUP35.
   
 0.991
A0A2P6Q017
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.989
A0A2P6PFQ6
Uncharacterized protein.
   
 0.988
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
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