A0A2P6PNR9 protein (Rosa chinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A2P6PNR9

Uncharacterized protein. (407 aa)

Predicted Functional Partners:

A0A2P6S4S5

0.553

A0A2P6S4V9

0.546

A0A2P6Q849

0.531

A0A2P6QN20

0.526

A0A2P6PNP4

0.525

A0A2P6QJK0

0.525

A0A2P6QTJ8

0.523

A0A2P6PXY2

0.522

A0A2P6SQ80

0.522

A0A2P6S436

0.521

Your Current Organism:

Rosa chinensis

NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A2P6PNP4	A0A2P6PNR9	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A2P6PNP4	A0A2P6PXY2	Uncharacterized protein.	Putative non-specific serine/threonine protein kinase.	0.443
A0A2P6PNP4	A0A2P6Q849	Uncharacterized protein.	Putative alpha/Beta hydrolase.	0.534
A0A2P6PNP4	A0A2P6QJK0	Uncharacterized protein.	Putative 43kDa postsynaptic protein.	0.496
A0A2P6PNP4	A0A2P6QN20	Uncharacterized protein.	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	0.524
A0A2P6PNP4	A0A2P6QTJ8	Uncharacterized protein.	Uncharacterized protein.	0.532
A0A2P6PNP4	A0A2P6S436	Uncharacterized protein.	Putative F-box domain-containing protein.	0.500
A0A2P6PNP4	A0A2P6S4S5	Uncharacterized protein.	Putative actin cross-linking.	0.488
A0A2P6PNP4	A0A2P6S4V9	Uncharacterized protein.	Putative actin cross-linking.	0.519
A0A2P6PNR9	A0A2P6PNP4	Uncharacterized protein.	Uncharacterized protein.	0.525
A0A2P6PNR9	A0A2P6PXY2	Uncharacterized protein.	Putative non-specific serine/threonine protein kinase.	0.522
A0A2P6PNR9	A0A2P6Q849	Uncharacterized protein.	Putative alpha/Beta hydrolase.	0.531
A0A2P6PNR9	A0A2P6QJK0	Uncharacterized protein.	Putative 43kDa postsynaptic protein.	0.525
A0A2P6PNR9	A0A2P6QN20	Uncharacterized protein.	Dirigent protein; Dirigent proteins impart stereoselectivity on the phenoxy radical-coupling reaction, yielding optically active lignans from two molecules of coniferyl alcohol in the biosynthesis of lignans, flavonolignans, and alkaloids and thus plays a central role in plant secondary metabolism.	0.526
A0A2P6PNR9	A0A2P6QTJ8	Uncharacterized protein.	Uncharacterized protein.	0.523
A0A2P6PNR9	A0A2P6S436	Uncharacterized protein.	Putative F-box domain-containing protein.	0.521
A0A2P6PNR9	A0A2P6S4S5	Uncharacterized protein.	Putative actin cross-linking.	0.553
A0A2P6PNR9	A0A2P6S4V9	Uncharacterized protein.	Putative actin cross-linking.	0.546
A0A2P6PNR9	A0A2P6SQ80	Uncharacterized protein.	Uncharacterized protein.	0.522
A0A2P6PXY2	A0A2P6PNP4	Putative non-specific serine/threonine protein kinase.	Uncharacterized protein.	0.443