STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P6QV95Putative zeta-carotene isomerase. (375 aa)    
Predicted Functional Partners:
A0A2P6R655
Zeta-carotene desaturase; Catalyzes the conversion of zeta-carotene to lycopene via the intermediary of neurosporene. It carries out two consecutive desaturations (introduction of double bonds) at positions C-7 and C-7'.
  
  
 0.981
A0A2P6QVM4
Putative 15-cis-phytoene desaturase.
  
  
 0.975
A0A2P6RF09
Putative all-trans-retinol 13,14-reductase.
  
 
 0.636
A0A2P6PAM7
Putative prolycopene isomerase.
  
 
 0.624
A0A2P6RKE2
Putative lycopene epsilon-cyclase.
      
 0.614
A0A2P6RTH5
Putative lycopene beta-cyclase.
      
 0.614
A0A2P6R571
Putative cytochrome P450; Belongs to the cytochrome P450 family.
      
 0.613
A0A2P6SB33
Putative de-etiolated protein 1, Det1.
      
 0.610
A0A2P6R5A5
Putative violaxanthin de-epoxidase; Belongs to the calycin superfamily. Lipocalin family.
      
 0.606
A0A2P6Q5L6
Putative cullin protein, neddylation; Belongs to the cullin family.
      
 0.605
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
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