STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P6RA96Putative diaminopimelate epimerase. (360 aa)    
Predicted Functional Partners:
A0A2P6PPH2
Putative diaminopimelate decarboxylase.
  
 0.983
A0A2P6PJN9
Putative LL-diaminopimelate aminotransferase.
  
 0.978
A0A2P6PE93
Putative LL-diaminopimelate aminotransferase.
  
 0.959
GATB
Glutamyl-tRNA(Gln) amidotransferase subunit B, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). Belongs to the GatB/GatE family. GatB subfamily.
    
 0.908
A0A2P6R3N8
Putative aspartate-semialdehyde dehydrogenase.
  
  
 0.880
A0A2P6S408
Putative aspartate-semialdehyde dehydrogenase.
  
  
 0.880
A0A2P6RJP1
NADPH:adrenodoxin oxidoreductase, mitochondrial.
    
 0.843
A0A2P6PB88
Putative aspartate kinase.
  
 
 0.782
A0A2P6R023
Putative aspartate kinase.
  
 
 0.782
A0A2P6RQ66
Putative aspartate kinase.
  
 
 0.782
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
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