Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
A0A2P6RHF9Putative ribonuclease D. (523 aa)    
Predicted Functional Partners:
A0A2P6PW87
Putative exosome complex RNA-binding protein 1/RRP40/RRP4.
   
 0.981
A0A2P6PY72
Putative exosome-associated factor Rrp47/DNA strand repair C1D.
   
 0.981
A0A2P6R5E0
Putative polyribonucleotide nucleotidyltransferase, exosome complex component CSL4.
   
 0.980
A0A2P6P5V3
Putative exosome complex RNA-binding protein 1/RRP40/RRP4.
   
 0.979
A0A2P6RE57
Putative exosome complex component Rrp42, archaea, exosome complex component Rrp43.
   
 0.979
A0A2P6RGG0
Putative exosome complex component Rrp42, archaea, PNPase/RNase PH domain-containing protein.
   
 0.970
A0A2P6RVT0
Putative ribosomal protein S5 domain 2-type.
   
 0.970
A0A2P6PZS1
Putative ribosomal protein S5 domain 2-type.
   
 0.965
A0A2P6Q020
Putative exosome complex component Rrp41, PNPase/RNase PH domain-containing protein.
   
 0.965
A0A2P6QNW2
Putative exosome complex component Rrp42, archaea, PNPase/RNase PH domain-containing protein.
   
 0.965
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
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