STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P6RU57Putative E3 ubiquitin ligase RBR family. (125 aa)    
Predicted Functional Partners:
A0A2P6REZ4
Putative zinc-binding ribosomal protein.
    
 0.555
A0A2P6REZ6
Putative ubiquitin.
    
 0.555
A0A2P6RF08
Putative ribosomal protein S27a.
    
 0.555
A0A2P6RAL0
Putative aminoacyltransferase, E1 ubiquitin-activating enzyme.
   
 
 0.547
A0A2P6PKX4
Putative aminoacyltransferase, E1 ubiquitin-activating enzyme.
   
 
 0.532
A0A2P6PKY7
Putative aminoacyltransferase, E1 ubiquitin-activating enzyme.
   
 
 0.532
A0A2P6PKY9
Putative aminoacyltransferase, E1 ubiquitin-activating enzyme.
   
 
 0.532
A0A2P6R7T4
Uncharacterized protein.
   
 
 0.532
A0A2P6RHL4
Putative eukaryotic translation initiation factor 4E (eIF-4E), translation Initiation factor eIF-4e; Belongs to the eukaryotic initiation factor 4E family.
    
 0.476
A0A2P6RZS6
Putative Zinc finger, RING/FYVE/PHD-type.
    
 0.426
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
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