STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2P6S5U9Putative transcription factor C3H family. (931 aa)    
Predicted Functional Partners:
A0A2P6RGF4
Uncharacterized protein.
   
 
 0.728
A0A2P6SK68
Putative tetratricopeptide-like helical domain-containing protein.
   
 
 0.728
A0A2P6SK76
Putative zinc-finger domain-containing protein.
   
 
 0.728
A0A2P6SLZ4
Putative nucleotide-binding alpha-beta plait domain-containing protein.
    
 
 0.715
A0A2P6PXI6
Putative transcription factor C3H family.
    
 
 0.682
A0A2P6RQA6
Putative nucleotide-binding alpha-beta plait domain-containing protein.
    
 
 0.675
A0A2P6RQB5
Putative nucleotide-binding alpha-beta plait domain-containing protein.
    
 
 0.675
A0A2P6RQF1
Uncharacterized protein.
    
 
 0.675
A0A2P6PCR1
Putative RNA helicase.
   
 
 0.558
A0A2P6PD13
Putative RNA helicase.
   
 
 0.558
Your Current Organism:
Rosa chinensis
NCBI taxonomy Id: 74649
Other names: China rose, R. chinensis, Rosa chinensis Jacq., Rosa indica auct., non L.
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.