Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AFL82635.1Hypothetical protein. (826 aa)    
Predicted Functional Partners:
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.565
AFL81249.1
Hypothetical protein.
  
     0.515
AFL81248.1
PFAM: Protein of unknown function (Porph_ging).
  
     0.507
AFL82633.1
Phosphohistidine phosphatase SixA; PFAM: Phosphoglycerate mutase family.
 
     0.504
AFL82636.1
Dienelactone hydrolase-like enzyme.
       0.491
AFL82106.1
Hypothetical protein.
  
     0.480
AFL82637.1
Hypothetical protein.
       0.474
AFL82638.1
Acetyltransferase, ribosomal protein N-acetylase; PFAM: Acetyltransferase (GNAT) family.
       0.474
AFL81518.1
Glycosyltransferase; PFAM: Glycosyl transferases group 1.
  
     0.473
AFL79681.1
PFAM: Protein of unknown function (DUF3298).
  
     0.446
Your Current Organism:
Aequorivita sublithincola
NCBI taxonomy Id: 746697
Other names: A. sublithincola DSM 14238, Aequorivita sublithincola 9-3, Aequorivita sublithincola DSM 14238, Aequorivita sublithincola str. DSM 14238, Aequorivita sublithincola strain DSM 14238
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.