STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RIR_0027700Transposable element tc3 transposase. (306 aa)    
Predicted Functional Partners:
RIR_2772800
Cardiolipin synthase/ hydrolase fusion protein.
    
  0.592
RIR_3213200
Protein kinase domain containing protein.
    
  0.492
RIR_2967300
Ras-related GTP-binding protein rab11.
    
 0.437
RIR_2125400
Lysophospholipase.
    
  0.436
RIR_2884600
Protein MYSM1.
    
 0.429
RIR_1931700
Myosin V; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 0.408
RIR_0443500
Nitrate reductase (NAD(P)H).
    
  0.406
RIR_1091700
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.406
RIR_1556600
Glycerophosphodiester phosphodiesterase.
    
  0.401
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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