Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RIR_0355600Putative Ubiquitin C. (734 aa)    
Predicted Functional Partners:
RIR_1303000
Protein nbr1 homolog.
   
 0.906
RIR_1302900
Protein nbr1 homolog.
   
 0.906
RIR_2520900
Transcription related zf-ZZ type zinc finger protein.
   
 0.906
RIR_3453200
Expressed protein.
   
 0.906
RIR_3257400
Uncharacterized protein.
   
 0.906
RIR_2884600
Protein MYSM1.
    
 0.891
RIR_3552600
Ribosomal 60S subunit protein L19.
   
 0.853
RIR_1973400
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 0.849
RIR_1677900
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 0.847
RIR_1579000
40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.846
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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