STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_1284000Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (228 aa)    
Predicted Functional Partners:
RIR_2098500
Superoxide dismutase, Cu-Zn family.
   
 0.971
RIR_1179310
Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
   
 0.971
RIR_0489700
Mitochondrial 54S ribosomal protein YmL10/YmL18.
   
 
 0.893
RIR_2881000
Mitochondrial 54S ribosomal protein yml9; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.887
RIR_3253800
Mitochondrial 54S ribosomal protein YmL23; Belongs to the universal ribosomal protein uL13 family.
  
 
 0.885
RIR_3254200
Mitochondrial 54S ribosomal protein yml8; Belongs to the bacterial ribosomal protein bL17 family.
   
 0.884
RIR_2973500
Aconitate hydratase, mitochondrial; Belongs to the aconitase/IPM isomerase family.
   
 
 0.883
RIR_2535700
Mitochondrial 54S ribosomal protein YmL4.
   
 
 0.878
RIR_3474900
Mitochondrial ribosomal protein subunit S18; Belongs to the bacterial ribosomal protein bS18 family.
   
 
 0.876
RIR_1373300
Mitochondrial 54S ribosomal protein YmL17/YmL30.
   
 
 0.874
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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