STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_1326800D5-like helicase-primase. (633 aa)    
Predicted Functional Partners:
RIR_3213200
Protein kinase domain containing protein.
    
 0.609
RIR_3118600
ASF1 like histone chaperone-domain-containing protein.
    
 0.598
RIR_3140500
Protein HIR; Required for replication-independent chromatin assembly and for the periodic repression of histone gene transcription during the cell cycle; Belongs to the WD repeat HIR1 family.
    
 0.538
RIR_0061300
Nucleoporin GLE1.
    
 0.528
RIR_1083700
Ribosomal 40S subunit protein S28.
   
   0.516
RIR_3523300
WD40-repeat-containing domain protein.
    
  0.514
RIR_2585700
Ribosomal 40S subunit protein S22; Belongs to the universal ribosomal protein uS8 family.
   
   0.502
RIR_2370000
Mitochondrial ribosomal protein small subunit mrps8p.
   
   0.502
RIR_3112400
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
   
   0.498
RIR_1973400
40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.
   
 
 0.493
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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