STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_1814800RNA-directed DNA polymerase from mobile element jockey-like. (1795 aa)    
Predicted Functional Partners:
RIR_0443500
Nitrate reductase (NAD(P)H).
    
  0.659
RIR_1091700
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.659
RIR_1986200
Similar to yt521-b-like splicing factor.
    
  0.572
RIR_1928200
Stearoyl-coa 9-desaturase.
     
 0.513
RIR_2584800
Stearoyl-CoA desaturase; Belongs to the cytochrome b5 family.
     
 0.513
RIR_0910800
Kinase-like domain-containing protein.
    
  0.415
RIR_1150800
Serine/threonine protein kinase.
    
  0.415
RIR_1760000
Serine/threonine protein kinase.
    
  0.415
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.