STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_2364200Endosome-associated ubiquitin isopeptidase. (451 aa)    
Predicted Functional Partners:
RIR_3261000
26S proteasome regulatory complex subunit Rpn7.
   
 0.949
RIR_3264100
Proteasome regulatory particle subunit.
   
 0.946
RIR_1161600
26S proteasome regulatory complex component.
   
 0.945
RIR_0677800
Ubiquitin-ribosomal 40S subunit protein S31 fusion protein.
    
 0.944
RIR_2536600
Serine/threonine protein kinase.
    
 0.944
RIR_1291400
26S proteasome non-ATPase regulatory subunit 3.
   
 0.941
RIR_2186600
Ubiquitin-ribosomal 60S subunit protein l40 fusion protein.
   
 0.941
RIR_2450600
RNA polymerase I specific transcription initiation factor rrn7.
   
 0.941
RIR_2564100
Myb_DNA-bind_2 domain-containing protein.
    
 0.940
RIR_3115000
26S proteasome regulatory subunit rpn6; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
   
 0.940
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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