STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_2489110JEMT01026697.1_cds_EXX58565.1_21461. (106 aa)    
Predicted Functional Partners:
RIR_3213200
Protein kinase domain containing protein.
    
 0.589
RIR_1556600
Glycerophosphodiester phosphodiesterase.
    
 0.578
RIR_2125400
Lysophospholipase.
    
 0.559
RIR_0443500
Nitrate reductase (NAD(P)H).
    
  0.545
RIR_1091700
Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.
    
  0.545
RIR_2772800
Cardiolipin synthase/ hydrolase fusion protein.
    
 0.539
RIR_3533100
Rho-type GTPase-activating protein 1/2.
    
 0.538
RIR_2357800
Peroxisomal 3,2-trans-enoyl-CoA isomerase.
    
  0.526
RIR_1025100
Ph domain-like protein.
    
 0.524
RIR_2812900
Kelch repeat protein.
    
  0.505
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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