STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_3213200Protein kinase domain containing protein. (1379 aa)    
Predicted Functional Partners:
RIR_3490700
Small nuclear ribonucleoprotein Sm D3.
    
 0.902
RIR_2239000
Putative small nuclear ribonucleoprotein sm d2.
    
 0.898
RIR_2495600
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.896
RIR_3085200
Putative vacuolar protein-sorting protein bro1.
    
 0.891
RIR_3299900
Guanylate kinase.
    
 0.891
RIR_2843500
ER to Golgi transport-related protein.
    
 0.891
RIR_0720100
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
    
 0.887
RIR_3277000
U6 snRNA-associated Sm-like protein LSm6.
    
 0.885
RIR_2188400
Small nuclear ribonucleoprotein G.
    
 0.884
RIR_0910800
Kinase-like domain-containing protein.
   
 0.865
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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