STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GLOIN_2v51443Nucleoporin nup49. (596 aa)    
Predicted Functional Partners:
RIR_0358700
Fg-nucleoporin nup57.
  
 
0.997
RIR_2556600
Fg-nucleoporin nsp1.
   
 0.987
RIR_1242000
Nuclear pore protein.
   
 0.981
RIR_0847600
Nuclear pore complex protein Nup205.
   
 0.980
RIR_1415800
Nuclear pore complex protein Nup155.
   
 0.979
RIR_3477500
Nuclear pore complex protein Nup133.
   
 0.978
RIR_1598000
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 0.976
RIR_3307600
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
   
 0.972
RIR_2377100
Protein transport protein SEC13; Belongs to the WD repeat SEC13 family.
    
 0.970
RIR_0755000
Nucleoporin SEH1; Belongs to the WD repeat SEC13 family.
    
 0.962
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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