STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_0296600Aurora kinase a-like. (73 aa)    
Predicted Functional Partners:
RIR_0023100
Serine/threonine-protein kinase.
   
0.952
RIR_1943700
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
 0.880
RIR_0719100
Chromosome segregation protein bir1.
   
 0.868
RIR_3299600
Ubiquitin-conjugating enzyme E2 C-like; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.839
RIR_2375800
G2/mitotic-specific cyclin 1/2; Belongs to the cyclin family.
   
 0.828
RIR_0715200
Cyclin-dependent kinase; Belongs to the protein kinase superfamily.
  
 0.814
RIR_0457100
Inner centromere protein, ark binding region protein.
    
 
 0.811
RIR_2510200
Inner centromere protein, ark binding region protein.
    
 
 0.811
RIR_0024100
Checkpoint serine/threonine-protein kinase.
   
 0.810
RIR_1290800
Kinetochore protein NDC80.
   
 
 0.807
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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