STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIR_0764700Neuronal calcium sensor 1. (190 aa)    
Predicted Functional Partners:
RIR_3265200
1-phosphatidylinositol 4-kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.981
RIR_2580200
Serine/threonine-protein phosphatase.
   
 0.935
RIR_3377600
Serine/threonine protein kinase.
    
 0.865
RIR_0858300
DNA repair protein Rad4.
    
 0.850
RIR_3263500
Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
   
 0.812
RIR_1931700
Myosin V; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
    
 0.801
RIR_2389300
Peptidylprolyl isomerase.
   
 
 0.801
RIR_2602200
Voltage-gated potassium channel.
    
 0.796
RIR_2704400
Nucleotide binding protein 1-like protein.
    
 0.796
RIR_0264000
Nucleotide binding protein 1-like protein.
    
 0.791
Your Current Organism:
Rhizophagus irregularis DAOM181602DAOM
NCBI taxonomy Id: 747089
Other names: Glomus cf. irregulare DAOM 197198, Glomus irregulare DAOM 197198, Glomus irregulare DAOM-197198, Glomus irregulare DAOM197198, Glomus sp. DAOM 197198, R. irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 181602, Rhizophagus irregularis DAOM 181602=DAOM 197198, Rhizophagus irregularis DAOM 197198
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