STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE14208.1Fimbrial assembly family protein; InterPro IPR007813; KEGG: sde:Sde_2690 periplasmic sensor signal transduction histidine kinase; PFAM: Fimbrial assembly; SPTR: Fimbrial assembly; IMG reference gene:2504783950; PFAM: Fimbrial assembly protein (PilN). (188 aa)    
Predicted Functional Partners:
AEE14207.1
COGs: COG4972 Tfp pilus assembly protein ATPase PilM; KEGG: dae:Dtox_3253 type IV pilus assembly protein PilM; SPTR: Type IV pilus assembly protein PilM; IMG reference gene:2504783949; PFAM: Competence protein A.
  
 
 0.987
AEE13951.1
COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482:IPR003593; KEGG: ddf:DEFDS_1109 type IV pilus assembly protein PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SMART: ATPase, AAA+ type, core; SPTR: Type IV pilus assembly protein PilB; IMG reference gene:2504783675; PFAM: Type II/IV secretion system protein; GSPII_E N-terminal domain.
  
 
 0.786
AEE14209.1
Hypothetical protein; IMG reference gene:2504783951.
       0.773
AEE14211.1
Type II and III secretion system protein; COGs: COG1450 Type II secretory pathway component PulD; InterPro IPR011662:IPR005644:IPR004846; KEGG: amr:AM1_1398 secretion system protein; PFAM: Type II/III secretion system; Secretin/TonB, short N-terminal; NolW-like; SPTR: Putative secretin and TonB short domain protein; IMG reference gene:2504783953; PFAM: Bacterial type II/III secretion system short domain; Secretin and TonB N terminus short domain; Bacterial type II and III secretion system protein.
     
 0.754
AEE14210.1
KEGG: dtu:Dtur_1034 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504783952; PFAM: Type IV pilus biogenesis.
       0.752
AEE13953.1
Type II secretion system F domain protein; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: sfu:Sfum_0118 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein; IMG reference gene:2504783677; PFAM: Bacterial type II secretion system protein F domain.
   
 
 0.714
AEE14212.1
COGs: COG0726 xylanase/chitin deacetylase; InterPro IPR002509; KEGG: eat:EAT1b_1923 polysaccharide deacetylase; PFAM: Polysaccharide deacetylase; SPTR: Polysaccharide deacetylase; IMG reference gene:2504783954; PFAM: Polysaccharide deacetylase.
       0.694
AEE14213.1
COGs: COG0589 Universal stress protein UspA and related nucleotide-binding protein; InterPro IPR006016; KEGG: dvm:DvMF_0804 UspA domain protein; PFAM: UspA; SPTR: UspA domain protein; IMG reference gene:2504783955; PFAM: Universal stress protein family.
       0.658
AEE13765.1
COGs: COG0069 Glutamate synthase domain 2; InterPro IPR000583:IPR006982:IPR002932:IPR002489; KEGG: pth:PTH_0734 glutamate synthase domain-containing 2; PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; PRIAM: Glutamate synthase (ferredoxin); SPTR: Glutamate synthase domain 2; IMG reference gene:2504783480; PFAM: Conserved region in glutamate synthase; GXGXG motif; Glutamate synthase central domain; Glutamine amidotransferases class-II.
       0.483
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily.
       0.447
Your Current Organism:
Thermodesulfobium narugense
NCBI taxonomy Id: 747365
Other names: T. narugense DSM 14796, Thermodesulfobium narugense DSM 14796, Thermodesulfobium narugense Na82, Thermodesulfobium narugense str. DSM 14796, Thermodesulfobium narugense strain DSM 14796, sulfate-reducing bacterium Na82
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