STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEE15332.1KEGG: hso:HS_1224 hypothetical protein; IMG reference gene:2504785141. (82 aa)    
Predicted Functional Partners:
AEE15331.1
Hypothetical protein; KEGG: mru:mru_1184 ATP-dependent DNA helicase UvrD/REP family; SPTR: ATP-dependent DNA helicase UvrD/REP family; IMG reference gene:2504785140; PFAM: Domain of unknown function DUF83.
       0.693
cas2-2
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.625
cas1-2
CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
       0.625
AEE15335.1
DNA primase small subunit; COGs: COG4951 conserved hypothetical protein; KEGG: cni:Calni_1598 DNA primase small subunit; SPTR: DNA primase small subunit; IMG reference gene:2504785144.
       0.625
AEE15336.1
InterPro IPR010173:IPR005537; KEGG: cni:Calni_1609 crispr-associated RAMP protein, csm5 family; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated RAMP protein, Csm5 family; TIGRFAM: CRISPR-associated protein, TM1807; IMG reference gene:2504785145; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm5.
       0.625
AEE15337.1
KEGG: drm:Dred_1630 hypothetical protein; SPTR: Putative uncharacterized protein; IMG reference gene:2504785146; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm4.
       0.625
AEE15338.1
CRISPR-associated RAMP protein, Csm3 family; COGs: COG1337 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR013412:IPR005537; KEGG: fno:Fnod_1390 CRISPR-associated RAMP Csm3 family protein; PFAM: Protein of unknown function DUF324; SPTR: CRISPR-associated ramp protein; TIGRFAM: CRISPR-associated RAMP Csm3; IMG reference gene:2504785147; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-A/MTUBE-associated RAMP protein Csm3; CRISPR type III-B/RAMP module RAMP protein Cmr6.
       0.518
AEE15339.1
Hypothetical protein; IMG reference gene:2504785148; PFAM: Protein of unknown function (DUF310).
       0.490
AEE15340.1
CRISPR-associated protein, Csm1 family; COGs: COG1353 hydrolase of the HD superfamily (permuted catalytic motifs); InterPro IPR013408:IPR006674; KEGG: cni:Calni_1613 crispr-associated protein, csm1 family; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; SPTR: CRISPR-associated protein; TIGRFAM: CRISPR-associated protein Csm1; IMG reference gene:2504785149; PFAM: HD domain; TIGRFAM: CRISPR-associated protein Cas10/Csm1, subtype III-A/MTUBE.
       0.490
Your Current Organism:
Thermodesulfobium narugense
NCBI taxonomy Id: 747365
Other names: T. narugense DSM 14796, Thermodesulfobium narugense DSM 14796, Thermodesulfobium narugense Na82, Thermodesulfobium narugense str. DSM 14796, Thermodesulfobium narugense strain DSM 14796, sulfate-reducing bacterium Na82
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