F4SBR1_MELLP protein (Melampsora laricipopulina)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

F4SBR1_MELLP

Uncharacterized protein. (189 aa)

Predicted Functional Partners:

F4S703_MELLP

0.831

F4S4Q6_MELLP

0.759

F4S220_MELLP

0.686

F4RMK3_MELLP

0.619

F4RPD0_MELLP

0.517

F4S1L1_MELLP

0.505

F4RCH7_MELLP

0.503

F4RZ72_MELLP

0.502

F4RMI4_MELLP

0.493

F4RUI2_MELLP

0.493

Your Current Organism:

Melampsora laricipopulina

NCBI taxonomy Id: 747676
Other names: M. larici-populina 98AG31, Melampsora larici-populina 98AG31, Melampsora laricis-populina 98AG31

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F4RCH7_MELLP	F4RMI4_MELLP	F4RCH7	F4RMI4	Uncharacterized protein.	Uncharacterized protein.	0.999
F4RCH7_MELLP	F4RMK3_MELLP	F4RCH7	F4RMK3	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.885
F4RCH7_MELLP	F4RPD0_MELLP	F4RCH7	F4RPD0	Uncharacterized protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
F4RCH7_MELLP	F4RUI2_MELLP	F4RCH7	F4RUI2	Uncharacterized protein.	Uncharacterized protein.	0.999
F4RCH7_MELLP	F4S1L1_MELLP	F4RCH7	F4S1L1	Uncharacterized protein.	Metallophos domain-containing protein.	0.459
F4RCH7_MELLP	F4S220_MELLP	F4RCH7	F4S220	Uncharacterized protein.	Uncharacterized protein.	0.893
F4RCH7_MELLP	F4S4Q6_MELLP	F4RCH7	F4S4Q6	Uncharacterized protein.	Uncharacterized protein.	0.471
F4RCH7_MELLP	F4SBR1_MELLP	F4RCH7	F4SBR1	Uncharacterized protein.	Uncharacterized protein.	0.503
F4RMI4_MELLP	F4RCH7_MELLP	F4RMI4	F4RCH7	Uncharacterized protein.	Uncharacterized protein.	0.999
F4RMI4_MELLP	F4RMK3_MELLP	F4RMI4	F4RMK3	Uncharacterized protein.	Serine/threonine-protein phosphatase.	0.887
F4RMI4_MELLP	F4RPD0_MELLP	F4RMI4	F4RPD0	Uncharacterized protein.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.999
F4RMI4_MELLP	F4RUI2_MELLP	F4RMI4	F4RUI2	Uncharacterized protein.	Uncharacterized protein.	0.999
F4RMI4_MELLP	F4S1L1_MELLP	F4RMI4	F4S1L1	Uncharacterized protein.	Metallophos domain-containing protein.	0.766
F4RMI4_MELLP	F4S220_MELLP	F4RMI4	F4S220	Uncharacterized protein.	Uncharacterized protein.	0.886
F4RMI4_MELLP	F4SBR1_MELLP	F4RMI4	F4SBR1	Uncharacterized protein.	Uncharacterized protein.	0.493
F4RMK3_MELLP	F4RCH7_MELLP	F4RMK3	F4RCH7	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.885
F4RMK3_MELLP	F4RMI4_MELLP	F4RMK3	F4RMI4	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.887
F4RMK3_MELLP	F4RPD0_MELLP	F4RMK3	F4RPD0	Serine/threonine-protein phosphatase.	T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.	0.879
F4RMK3_MELLP	F4RUI2_MELLP	F4RMK3	F4RUI2	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.891
F4RMK3_MELLP	F4RZ72_MELLP	F4RMK3	F4RZ72	Serine/threonine-protein phosphatase.	Uncharacterized protein.	0.937