STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0039Aminotransferase, class V; Identified by match to protein family HMM PF00266. (383 aa)    
Predicted Functional Partners:
MALL_0630
Putative thioredoxin-disulfide reductase; Identified by match to protein family HMM PF00070; match to protein family HMM PF01134; match to protein family HMM PF07992.
  
 
 0.885
nusB
Transcription antitermination factor NusB; Identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951.
       0.814
MALL_0040
Conserved domain protein.
       0.773
MALL_0038
Hypothetical protein; Identified by glimmer; putative.
       0.768
MALL_0041
Conserved hypothetical protein.
       0.723
MALL_0036
Conserved hypothetical protein.
       0.679
glyA
Glycine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.
    
 0.586
MALL_0479
Identified by match to protein family HMM PF01965.
  
 
  0.547
pheT
phenylalanyl-tRNA synthetase, beta subunit; Identified by match to protein family HMM PF03483; match to protein family HMM TIGR00472.
  
  
 0.532
MALL_0056
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
     
 0.475
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.