Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| MALL_0063 | MALL_0202 | Hypothetical protein; Identified by glimmer; putative. | Conserved domain protein. | 0.612 |
| MALL_0063 | MALL_0204 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM PF00657. | 0.612 |
| MALL_0063 | MALL_0294 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.633 |
| MALL_0063 | MALL_0326 | Hypothetical protein; Identified by glimmer; putative. | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | 0.674 |
| MALL_0063 | MALL_0443 | Hypothetical protein; Identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.633 |
| MALL_0063 | MALL_0445 | Hypothetical protein; Identified by glimmer; putative. | Conserved hypothetical protein. | 0.633 |
| MALL_0063 | MALL_0651 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM TIGR02184. | 0.615 |
| MALL_0063 | MALL_0652 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM TIGR02184. | 0.617 |
| MALL_0063 | MALL_0653 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM TIGR02184. | 0.608 |
| MALL_0063 | MALL_0797 | Hypothetical protein; Identified by glimmer; putative. | Identified by match to protein family HMM TIGR02184. | 0.598 |
| MALL_0202 | MALL_0063 | Conserved domain protein. | Hypothetical protein; Identified by glimmer; putative. | 0.612 |
| MALL_0202 | MALL_0204 | Conserved domain protein. | Identified by match to protein family HMM PF00657. | 0.893 |
| MALL_0204 | MALL_0063 | Identified by match to protein family HMM PF00657. | Hypothetical protein; Identified by glimmer; putative. | 0.612 |
| MALL_0204 | MALL_0202 | Identified by match to protein family HMM PF00657. | Conserved domain protein. | 0.893 |
| MALL_0204 | MALL_0653 | Identified by match to protein family HMM PF00657. | Identified by match to protein family HMM TIGR02184. | 0.443 |
| MALL_0204 | MALL_0797 | Identified by match to protein family HMM PF00657. | Identified by match to protein family HMM TIGR02184. | 0.489 |
| MALL_0294 | MALL_0063 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | Hypothetical protein; Identified by glimmer; putative. | 0.633 |
| MALL_0294 | MALL_0326 | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | 0.401 |
| MALL_0326 | MALL_0063 | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | Hypothetical protein; Identified by glimmer; putative. | 0.674 |
| MALL_0326 | MALL_0294 | 5'-nucleotidase, C-terminal domain protein; Identified by match to protein family HMM PF00149; match to protein family HMM PF02872; Belongs to the 5'-nucleotidase family. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.401 |
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