STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0097Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470. (404 aa)    
Predicted Functional Partners:
kduI
5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
  
  
 0.839
MALL_0098
Hypothetical protein; Identified by glimmer; putative.
     
 0.800
MALL_0095
Hypothetical protein; Identified by glimmer; putative.
       0.775
MALL_0152
Glycosyl hydrolase family 2, sugar binding domain protein; Identified by match to protein family HMM PF00703; match to protein family HMM PF02836; match to protein family HMM PF02837; Belongs to the glycosyl hydrolase 2 family.
   
  0.679
MALL_0108
Hypothetical protein; Identified by glimmer; putative.
 
     0.678
MALL_0106
Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124.
 
  
 0.651
MALL_0101
PTS system fructose IIA component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03610.
 
  
 0.552
MALL_0094
SIS domain protein; Identified by match to protein family HMM PF01380.
       0.464
MALL_0755
BNR/Asp-box repeat protein; Identified by match to protein family HMM PF02012.
  
  
  0.405
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.