Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0098Hypothetical protein; Identified by glimmer; putative. (35 aa)    
Predicted Functional Partners:
MALL_0099
Conserved domain protein.
  
 0.986
MALL_0100
PTS system mannose/fructose/sorbose family IID component; Identified by match to protein family HMM PF03613.
  
 0.983
MALL_0101
PTS system fructose IIA component; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03610.
  
 
 0.979
MALL_0072
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
  
 
 0.934
MALL_0265
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.
  
 
 0.934
MALL_0192
Phosphocarrier, HPr family; Identified by match to protein family HMM PF00381; match to protein family HMM TIGR01003.
  
 0.923
MALL_0097
Glycosyl hydrolase, family 88; Identified by match to protein family HMM PF07470.
       0.800
kduI
5-keto 4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
       0.798
MALL_0095
Hypothetical protein; Identified by glimmer; putative.
       0.766
nagA
N-acetylglucosamine-6-phosphate deacetylase; Identified by match to protein family HMM PF01979; match to protein family HMM TIGR00221.
    
 0.591
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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