Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MALL_0119Basic membrane protein; Identified by match to protein family HMM PF02608. (432 aa)    
Predicted Functional Partners:
MALL_0120
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 
 0.988
MALL_0122
Amino acid or sugar ABC transport system, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.988
MALL_0121
Amino acid or sugar ABC transport system, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
MALL_0660
Hypothetical protein; Identified by glimmer; putative.
  
  
 0.529
MALL_0306
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
    
 0.514
MALL_0034
Conserved domain protein.
 
    0.508
MALL_0832
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.
  
     0.481
MALL_0118
Hypothetical protein; Identified by glimmer; putative.
       0.463
MALL_0235
Conserved hypothetical protein.
 
    0.449
apt
Putative adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
     
 0.415
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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