STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0140Phosphatidylinositol-specific phospholipase C, X domain protein; Identified by match to protein family HMM PF00388. (828 aa)    
Predicted Functional Partners:
MALL_0141
Hypothetical protein; Identified by glimmer; putative.
       0.718
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 
 0.540
MALL_0660
Hypothetical protein; Identified by glimmer; putative.
    
 
 0.540
MALL_0796
Conserved hypothetical protein; Identified by match to protein family HMM PF07665.
    
 
 0.540
MALL_0142
Phosphatidylinositol-specific phospholipase C, X domain protein; Identified by match to protein family HMM PF00388.
 
    
0.478
trkA
TrkA-C domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
       0.405
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.