Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dhaKDihydroxyacetone kinase, DhaK subunit; Identified by match to protein family HMM PF02733; match to protein family HMM TIGR02363. (332 aa)    
Predicted Functional Partners:
dhaL
Dihydroxyacetone kinase, L subunit; Identified by match to protein family HMM PF02734; match to protein family HMM TIGR02365.
  
  0.999
MALL_0144
Dihydroxyacetone kinase, phosphotransfer subunit; Identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364.
  
 0.988
MALL_0350
NAD-dependent glycerol-3-phosphate dehydrogenase N-terminal domain protein; Identified by match to protein family HMM PF01210; match to protein family HMM PF03446; match to protein family HMM PF07479; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
   
 
 0.826
MALL_0441
FAD dependent oxidoreductase; Identified by match to protein family HMM PF01266.
    
  0.826
pyk
Pyruvate kinase; Identified by match to protein family HMM PF00224; match to protein family HMM TIGR01064; Belongs to the pyruvate kinase family.
 
  
 0.756
trkA
TrkA-C domain protein; Identified by match to protein family HMM PF02080; match to protein family HMM PF02254.
       0.518
MALL_0142
Phosphatidylinositol-specific phospholipase C, X domain protein; Identified by match to protein family HMM PF00388.
       0.515
MALL_0103
Putative 2-deoxy-D-gluconate 3-dehydrogenase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00106.
    
 0.470
ptsP
Phosphoenolpyruvate-protein phosphotransferase; General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).
  
 
 0.461
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
     
 0.455
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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