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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0147DHH family protein; Identified by match to protein family HMM PF01368. (643 aa)    
Predicted Functional Partners:
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
  
 0.843
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
  
 0.836
MALL_0150
CBS domain protein; Identified by match to protein family HMM PF00571; match to protein family HMM PF01595.
       0.601
MALL_0660
Hypothetical protein; Identified by glimmer; putative.
  
     0.585
whiA
Conserved hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.552
MALL_0454
Helicase, RecD/TraA family; Identified by match to protein family HMM PF07723.
  
     0.536
MALL_0235
Conserved hypothetical protein.
  
     0.499
MALL_0151
Identified by match to protein family HMM PF03372.
 
     0.486
MALL_0034
Conserved domain protein.
 
     0.478
MALL_0144
Dihydroxyacetone kinase, phosphotransfer subunit; Identified by match to protein family HMM PF03610; match to protein family HMM TIGR02364.
       0.451
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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