Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0169Conserved hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift. (1109 aa)    
Predicted Functional Partners:
MALL_0168
Conserved hypothetical protein.
  
    0.833
MALL_0170
Conserved hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.802
MALL_0240
Conserved hypothetical protein.
  
     0.756
MALL_0034
Conserved domain protein.
  
     0.735
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
     0.735
MALL_0036
Conserved hypothetical protein.
  
     0.728
MALL_0782
Identified by match to protein family HMM PF03631.
  
     0.680
MALL_0660
Hypothetical protein; Identified by glimmer; putative.
 
  
 0.662
MALL_0689
Conserved hypothetical protein; Identified by match to protein family HMM PF02588.
  
     0.662
MALL_0512
Conserved hypothetical protein.
 
     0.661
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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