Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
MALL_0176ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (409 aa)    
Predicted Functional Partners:
MALL_0177
ABC transporter, ATP-binding protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00005.
 
 
 0.970
MALL_0178
High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646.
 
  
  0.968
MALL_0343
Lipofamily protein.
  
     0.711
MALL_0617
Conserved hypothetical protein.
  
     0.708
MALL_0503
Lipofamily protein.
  
     0.677
MALL_0668
Lipofamily protein.
  
     0.609
MALL_0667
Lipofamily protein.
  
     0.596
MALL_0774
Phosphopantethiene--protein transferase domain protein; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; Belongs to the P-Pant transferase superfamily.
  
     0.580
MALL_0669
Lipofamily protein.
  
     0.576
MALL_0798
Identified by match to protein family HMM TIGR02184.
  
     0.550
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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