Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| MALL_0036 | MALL_0106 | Conserved hypothetical protein. | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | 0.481 |
| MALL_0036 | MALL_0151 | Conserved hypothetical protein. | Identified by match to protein family HMM PF03372. | 0.672 |
| MALL_0036 | MALL_0189 | Conserved hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.701 |
| MALL_0036 | MALL_0235 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.771 |
| MALL_0036 | MALL_0512 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.764 |
| MALL_0036 | MALL_0782 | Conserved hypothetical protein. | Identified by match to protein family HMM PF03631. | 0.689 |
| MALL_0036 | MALL_0832 | Conserved hypothetical protein. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.767 |
| MALL_0106 | MALL_0036 | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | Conserved hypothetical protein. | 0.481 |
| MALL_0106 | MALL_0151 | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | Identified by match to protein family HMM PF03372. | 0.584 |
| MALL_0106 | MALL_0189 | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.664 |
| MALL_0106 | MALL_0235 | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | Conserved hypothetical protein. | 0.450 |
| MALL_0106 | MALL_0832 | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.691 |
| MALL_0151 | MALL_0036 | Identified by match to protein family HMM PF03372. | Conserved hypothetical protein. | 0.672 |
| MALL_0151 | MALL_0106 | Identified by match to protein family HMM PF03372. | Polysaccharide lyase family 8, super-sandwich domain protein; Identified by match to protein family HMM PF02278; match to protein family HMM PF08124. | 0.584 |
| MALL_0151 | MALL_0189 | Identified by match to protein family HMM PF03372. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.768 |
| MALL_0151 | MALL_0235 | Identified by match to protein family HMM PF03372. | Conserved hypothetical protein. | 0.764 |
| MALL_0151 | MALL_0464 | Identified by match to protein family HMM PF03372. | MATE domain protein; Identified by match to protein family HMM PF01554. | 0.498 |
| MALL_0151 | MALL_0782 | Identified by match to protein family HMM PF03372. | Identified by match to protein family HMM PF03631. | 0.571 |
| MALL_0151 | MALL_0832 | Identified by match to protein family HMM PF03372. | DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144. | 0.754 |
| MALL_0188 | MALL_0189 | Conserved hypothetical protein. | Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative. | 0.773 |
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