Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0191ABC transporter, permease protein; Identified by match to protein family HMM PF00528. (324 aa)    
Predicted Functional Partners:
MALL_0190
Conserved hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
 0.940
MALL_0662
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.940
MALL_0663
Putative oligopeptide ABC transporter, ATP-binding protein OppD; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.938
MALL_0664
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005.
 
 0.924
MALL_0661
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
     
  0.819
MALL_0009
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
 
 0.799
MALL_0023
ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; Belongs to the ABC transporter superfamily.
 
 0.775
MALL_0022
ABC transporter, permease protein; Identified by match to protein family HMM PF00528.
  
 0.772
MALL_0007
Bacterial extracellular solute-binding protein, family 5.
  
 0.752
MALL_0020
Bacterial extracellular solute-binding protein, family 5; Identified by match to protein family HMM PF00496.
  
 0.752
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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