Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0239Conserved hypothetical protein. (762 aa)    
Predicted Functional Partners:
MALL_0240
Conserved hypothetical protein.
 
     0.951
MALL_0204
Identified by match to protein family HMM PF00657.
  
     0.773
MALL_0235
Conserved hypothetical protein.
  
     0.773
MALL_0660
Hypothetical protein; Identified by glimmer; putative.
 
    0.765
MALL_0832
DNA polymerase III, delta subunit; Identified by match to protein family HMM PF06144.
  
     0.764
MALL_0733
Metal cation transporter, zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein; Identified by match to protein family HMM PF02535.
  
     0.758
MALL_0241
Conserved hypothetical protein.
       0.752
MALL_0036
Conserved hypothetical protein.
  
     0.751
MALL_0739
Conserved hypothetical protein.
  
     0.748
MALL_0368
Conserved hypothetical protein; Identified by match to protein family HMM PF03202; match to protein family HMM PF03305.
  
     0.746
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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