Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MALL_0261RDD family protein; Identified by match to protein family HMM PF06271. (214 aa)    
Predicted Functional Partners:
MALL_0262
Putative ATP-dependent DNA helicase PcrA; Identified by match to protein family HMM PF00580.
       0.829
MALL_0263
Hypothetical protein; Identified by glimmer; putative.
       0.829
MALL_0260
Glycosyltransferase, group 2 family protein; Identified by match to protein family HMM PF00535.
       0.820
MALL_0264
EDD domain protein, DegV family; Identified by match to protein family HMM PF02645; match to protein family HMM TIGR00762.
       0.547
MALL_0259
Hydrolase, alpha/beta domain protein; Identified by match to protein family HMM PF00561.
       0.528
MALL_0265
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359.
       0.457
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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