Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0306ABC transporter, ATP-binding protein; Identified by match to protein family HMM PF00005. (510 aa)    
Predicted Functional Partners:
MALL_0305
Amino acid or sugar ABC transport system, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
MALL_0307
Conserved hypothetical protein.
 
 0.965
MALL_0304
ROK family protein; Identified by match to protein family HMM PF00480.
     
 0.731
MALL_0553
Conserved hypothetical protein.
  
 
 0.706
MALL_0119
Basic membrane protein; Identified by match to protein family HMM PF02608.
    
 0.514
MALL_0122
Amino acid or sugar ABC transport system, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
    
 0.508
MALL_0121
Amino acid or sugar ABC transport system, permease protein; Identified by match to protein family HMM PF02653; Belongs to the binding-protein-dependent transport system permease family.
    
  0.471
MALL_0257
Phosphotransferase system, EIIB; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00830.
  
  
 0.441
MALL_0707
PTS system, glucose-like IIB component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830.
  
  
 0.441
MALL_0072
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Identified by match to protein family HMM PF00359; match to protein family HMM PF02378; match to protein family HMM PF02379; match to protein family HMM TIGR00829; match to protein family HMM TIGR00848; match to protein family HMM TIGR01427.
     
 0.418
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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