Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MALL_0316 | MALL_0317 | MALL_0316 | MALL_0317 | Riboflavin kinase; Identified by match to protein family HMM PF06574. | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | 0.842 |
| MALL_0316 | msrB | MALL_0316 | MALL_0319 | Riboflavin kinase; Identified by match to protein family HMM PF06574. | methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. | 0.774 |
| MALL_0316 | rpsO | MALL_0316 | MALL_0315 | Riboflavin kinase; Identified by match to protein family HMM PF06574. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.682 |
| MALL_0316 | truB | MALL_0316 | MALL_0318 | Riboflavin kinase; Identified by match to protein family HMM PF06574. | tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family. | 0.890 |
| MALL_0317 | MALL_0316 | MALL_0317 | MALL_0316 | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | Riboflavin kinase; Identified by match to protein family HMM PF06574. | 0.842 |
| MALL_0317 | msrB | MALL_0317 | MALL_0319 | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. | 0.785 |
| MALL_0317 | rpsO | MALL_0317 | MALL_0315 | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.579 |
| MALL_0317 | truB | MALL_0317 | MALL_0318 | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family. | 0.792 |
| MALL_0454 | truB | MALL_0454 | MALL_0318 | Helicase, RecD/TraA family; Identified by match to protein family HMM PF07723. | tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family. | 0.833 |
| MALL_0468 | infB | MALL_0468 | MALL_0470 | Putative transcription termination factor NusA. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.982 |
| MALL_0468 | rbfA | MALL_0468 | MALL_0794 | Putative transcription termination factor NusA. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.423 |
| MALL_0468 | rpsO | MALL_0468 | MALL_0315 | Putative transcription termination factor NusA. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.636 |
| MALL_0468 | truB | MALL_0468 | MALL_0318 | Putative transcription termination factor NusA. | tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family. | 0.826 |
| infB | MALL_0468 | MALL_0470 | MALL_0468 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Putative transcription termination factor NusA. | 0.982 |
| infB | rbfA | MALL_0470 | MALL_0794 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.876 |
| infB | rpsO | MALL_0470 | MALL_0315 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.989 |
| infB | truB | MALL_0470 | MALL_0318 | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family. | 0.942 |
| msrB | MALL_0316 | MALL_0319 | MALL_0316 | methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. | Riboflavin kinase; Identified by match to protein family HMM PF06574. | 0.774 |
| msrB | MALL_0317 | MALL_0319 | MALL_0317 | methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. | HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484. | 0.785 |
| msrB | rpsO | MALL_0319 | MALL_0315 | methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.754 |
page 1 of 3