Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MALL_0320Antibiotic biosynthesis monooxygenase; Identified by match to protein family HMM PF03992. (94 aa)    
Predicted Functional Partners:
MALL_0322
Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; Belongs to the methyltransferase superfamily.
       0.635
metG
methionine--tRNA ligase; Identified by match to protein family HMM PF09334; match to protein family HMM TIGR00398.
       0.633
rnr
Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs.
       0.620
secG
Preprotein translocase, SecG subunit; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
       0.570
MALL_0316
Riboflavin kinase; Identified by match to protein family HMM PF06574.
       0.548
MALL_0317
HAD hydrolase, family IIB; Identified by match to protein family HMM PF08282; match to protein family HMM TIGR01484.
       0.548
truB
tRNA pseudouridine synthase B; Identified by match to protein family HMM PF01509; match to protein family HMM TIGR00431; Belongs to the pseudouridine synthase TruB family.
       0.548
msrB
methionine-R-sulfoxide reductase; Identified by match to protein family HMM PF01641; match to protein family HMM TIGR00357.
       0.548
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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