nfeD protein (Mycoplasma alligatoris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

nfeD

Identified by match to protein family HMM PF01957. (170 aa)

Predicted Functional Partners:

MALL_0380

0.894

pgmB

0.670

MALL_0383

0.668

MALL_0384

0.668

MALL_0385

0.668

MALL_0386

0.435

Your Current Organism:

Mycoplasma alligatoris

NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MALL_0380	MALL_0383	MALL_0380	MALL_0383	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	0.668
MALL_0380	MALL_0384	MALL_0380	MALL_0384	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	0.680
MALL_0380	MALL_0385	MALL_0380	MALL_0385	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.	0.668
MALL_0380	MALL_0386	MALL_0380	MALL_0386	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Hypothetical protein; Identified by glimmer; putative.	0.435
MALL_0380	nfeD	MALL_0380	MALL_0381	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Identified by match to protein family HMM PF01957.	0.894
MALL_0380	pgmB	MALL_0380	MALL_0382	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	Beta-phosphoglucomutase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009.	0.679
MALL_0383	MALL_0380	MALL_0383	MALL_0380	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	0.668
MALL_0383	MALL_0384	MALL_0383	MALL_0384	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	0.901
MALL_0383	MALL_0385	MALL_0383	MALL_0385	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.	0.924
MALL_0383	MALL_0386	MALL_0383	MALL_0386	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	Hypothetical protein; Identified by glimmer; putative.	0.495
MALL_0383	nfeD	MALL_0383	MALL_0381	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	Identified by match to protein family HMM PF01957.	0.668
MALL_0383	pgmB	MALL_0383	MALL_0382	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	Beta-phosphoglucomutase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009.	0.998
MALL_0384	MALL_0380	MALL_0384	MALL_0380	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	0.680
MALL_0384	MALL_0383	MALL_0384	MALL_0383	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	0.901
MALL_0384	MALL_0385	MALL_0384	MALL_0385	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.	0.956
MALL_0384	MALL_0386	MALL_0384	MALL_0386	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	Hypothetical protein; Identified by glimmer; putative.	0.495
MALL_0384	nfeD	MALL_0384	MALL_0381	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	Identified by match to protein family HMM PF01957.	0.668
MALL_0384	pgmB	MALL_0384	MALL_0382	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.	Beta-phosphoglucomutase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009.	0.948
MALL_0385	MALL_0380	MALL_0385	MALL_0380	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.	SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.	0.668
MALL_0385	MALL_0383	MALL_0385	MALL_0383	Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.	Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.	0.924

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About