STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgmBBeta-phosphoglucomutase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009. (222 aa)    
Predicted Functional Partners:
MALL_0383
Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.
 
 0.997
MALL_0384
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.
  
 
 0.943
MALL_0385
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.
     
 0.842
MALL_0380
SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.
     
 0.681
MALL_0056
Aminotransferase, class V; Identified by match to protein family HMM PF00266.
    
 0.675
nfeD
Identified by match to protein family HMM PF01957.
       0.670
MALL_0257
Phosphotransferase system, EIIB; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00830.
  
  
 0.647
MALL_0707
PTS system, glucose-like IIB component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830.
  
  
 0.647
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
 0.565
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
   
  0.545
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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