Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0384Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name. (546 aa)    
Predicted Functional Partners:
MALL_0385
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; match to protein family HMM PF02922; overlaps another CDS with the same product name; Belongs to the glycosyl hydrolase 13 family.
 
 0.956
MALL_0257
Phosphotransferase system, EIIB; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM TIGR00830.
  
 
 0.952
MALL_0707
PTS system, glucose-like IIB component; Identified by match to protein family HMM PF00358; match to protein family HMM PF00367; match to protein family HMM PF02378; match to protein family HMM TIGR00826; match to protein family HMM TIGR00830.
  
 
 0.952
pgmB
Beta-phosphoglucomutase; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01990; match to protein family HMM TIGR02009.
  
 
 0.948
MALL_0383
Phage tail component, N-terminal domain protein; Identified by match to protein family HMM PF03632; match to protein family HMM PF03633; match to protein family HMM PF03636.
  
 
 0.901
MALL_0393
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
 
  
 
0.870
MALL_0380
SPFH/Band 7/PHB domain protein; Identified by match to protein family HMM PF01145.
   
   0.680
nfeD
Identified by match to protein family HMM PF01957.
       0.668
MALL_0304
ROK family protein; Identified by match to protein family HMM PF00480.
    
 0.654
MALL_0308
Amino acid permease; Identified by match to protein family HMM PF00324.
   
 0.523
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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