Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
MALL_0401Amino acid permease; Identified by match to protein family HMM PF00324. (459 aa)    
Predicted Functional Partners:
MALL_0239
Conserved hypothetical protein.
  
     0.721
MALL_0733
Metal cation transporter, zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein; Identified by match to protein family HMM PF02535.
 
     0.642
MALL_0393
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128.
  
 0.636
coaX
Pantothenate kinase, type III; Identified by match to protein family HMM TIGR00671.
  
     0.596
MALL_0384
Alpha amylase, catalytic domain protein; Identified by match to protein family HMM PF00128; overlaps another CDS with the same product name.
   
 0.523
MALL_0402
Integral membrane protein; Identified by match to protein family HMM PF09529.
       0.500
dnaX
DNA polymerase III, subunit gamma and tau; Identified by match to protein family HMM PF00004; match to protein family HMM TIGR02397.
       0.496
yraL
S-adenosylmethionine-dependent methyltransferase, YraL family; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.480
MALL_0396
Hypothetical protein; Identified by glimmer; putative.
       0.480
tmk
dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
       0.480
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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