STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0533Carbamate kinase; Identified by match to protein family HMM PF00696; Belongs to the carbamate kinase family. (310 aa)    
Predicted Functional Partners:
argF
Ornithine carbamoyltransferase; Identified by match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658.
 
 
 0.998
MALL_0535
Putative arginine deiminase; Identified by match to protein family HMM PF02274.
  
  
 0.950
MALL_0532
Amino acid permease; Identified by match to protein family HMM PF00324.
  
  
 0.812
MALL_0780
Putative aspartyl/glutamyl-tRNA amidotransferase subunit A; Identified by match to protein family HMM PF01425.
    
  0.496
eutD
Phosphate acetyltransferase; Identified by match to protein family HMM PF01515.
  
  
 0.417
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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