Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| MALL_0176 | MALL_0178 | MALL_0176 | MALL_0178 | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | 0.983 |
| MALL_0176 | MALL_0524 | MALL_0176 | MALL_0524 | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | 0.542 |
| MALL_0176 | MALL_0617 | MALL_0176 | MALL_0617 | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Conserved hypothetical protein. | 0.708 |
| MALL_0176 | MALL_0774 | MALL_0176 | MALL_0774 | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Phosphopantethiene--protein transferase domain protein; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; Belongs to the P-Pant transferase superfamily. | 0.580 |
| MALL_0176 | yeaZ | MALL_0176 | MALL_0489 | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725. | 0.413 |
| MALL_0178 | MALL_0176 | MALL_0178 | MALL_0176 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.983 |
| MALL_0178 | MALL_0524 | MALL_0178 | MALL_0524 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | 0.700 |
| MALL_0178 | MALL_0617 | MALL_0178 | MALL_0617 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | Conserved hypothetical protein. | 0.746 |
| MALL_0178 | MALL_0738 | MALL_0178 | MALL_0738 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | Conserved domain protein. | 0.441 |
| MALL_0178 | MALL_0774 | MALL_0178 | MALL_0774 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | Phosphopantethiene--protein transferase domain protein; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; Belongs to the P-Pant transferase superfamily. | 0.442 |
| MALL_0178 | yeaZ | MALL_0178 | MALL_0489 | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725. | 0.420 |
| MALL_0524 | MALL_0176 | MALL_0524 | MALL_0176 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | ABC transporter, permease protein; Identified by match to protein family HMM PF00528. | 0.542 |
| MALL_0524 | MALL_0178 | MALL_0524 | MALL_0178 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | High affinity transport system protein p37; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF06646. | 0.700 |
| MALL_0524 | MALL_0617 | MALL_0524 | MALL_0617 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | Conserved hypothetical protein. | 0.730 |
| MALL_0524 | MALL_0738 | MALL_0524 | MALL_0738 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | Conserved domain protein. | 0.762 |
| MALL_0524 | MALL_0739 | MALL_0524 | MALL_0739 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | Conserved hypothetical protein. | 0.486 |
| MALL_0524 | MALL_0774 | MALL_0524 | MALL_0774 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | Phosphopantethiene--protein transferase domain protein; Identified by match to protein family HMM PF01648; match to protein family HMM TIGR00556; Belongs to the P-Pant transferase superfamily. | 0.441 |
| MALL_0524 | yeaZ | MALL_0524 | MALL_0489 | Identified by match to protein family HMM PF01633; match to protein family HMM PF01636. | Universal bacterial protein YeaZ; Identified by match to protein family HMM PF00814; match to protein family HMM TIGR03725. | 0.733 |
| MALL_0616 | MALL_0617 | MALL_0616 | MALL_0617 | Chromate transport protein; Identified by match to protein family HMM PF02417. | Conserved hypothetical protein. | 0.951 |
| MALL_0616 | ligA | MALL_0616 | MALL_0614 | Chromate transport protein; Identified by match to protein family HMM PF02417. | DNA ligase (NAD(+)); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA. | 0.547 |
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