Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MALL_0787Type II restriction endonuclease family protein. (109 aa)    
Predicted Functional Partners:
MALL_0786
Conserved domain protein.
      0.959
MALL_0078
Conserved hypothetical protein.
  
 
 0.479
MALL_0079
Type I restriction modification DNA specificity domain protein; Identified by match to protein family HMM PF01420.
  
 
 0.479
MALL_0080
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
  
 
 0.467
MALL_0081
N-6 DNA Methylase; Identified by match to protein family HMM PF02384.
  
 
 0.467
MALL_0082
Conserved domain protein.
  
 
 0.467
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
       0.421
Your Current Organism:
Mycoplasma alligatoris
NCBI taxonomy Id: 747682
Other names: M. alligatoris A21JP2, Mycoplasma alligatoris A21JP2, Mycoplasma alligatoris ATCC 700619, Mycoplasma alligatoris str. A21JP2, Mycoplasma alligatoris strain A21JP2
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